SubtiBank SubtiBank
ywqM [2019-02-27 18:34:04]
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ywqM [2019-02-27 18:34:04]

similar to transcriptional regulator ([SW|LysR family])
locus
BSU36160
pI
5.57
mw
33.02 kDa
protein length
293 aa Sequence Blast
gene length
882 bp Sequence Blast
function
unknown
product
transcriptional regulator ([SW|LysR family])
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    3,723,454 → 3,724,335

    The protein

    Protein family

  • [SW|LysR family]

    • Structure

  • [PDB|5Y2V] (from Synechocystis PCC6803, 29% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|B6CC41A844FDF1DBCB899447F35E006BC94B064B|ywqM]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-A567 (ywqM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/567 NBRP B. subtilis, Japan]
  • BKE36160 (Δ[gene|B6CC41A844FDF1DBCB899447F35E006BC94B064B|ywqM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE36160 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTTGTTCTCTTCCTTTCT, downstream forward: _UP4_TAAAACCTCTCCACAAGGAC
  • BKK36160 (Δ[gene|B6CC41A844FDF1DBCB899447F35E006BC94B064B|ywqM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK36160 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTTGTTCTCTTCCTTTCT, downstream forward: _UP4_TAAAACCTCTCCACAAGGAC